Monthly Archives: September 2012

Wednesday 09/12/12

Posted on September 12, 2012 by admin

9:20A – 7:00P STORM4 status Laser powers: 488 68mW, 561 50mW, 656 78mW. Neither table is floating At first system failed to connect properly to AOTF Fixed AOTF by reboot, but system now fails to connect to focus-lock IR camera. … Continue reading →

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Coding projects to do:

Posted on September 11, 2012 by admin

mRNA counting package change fname to include slidedate folder as well as fileroot in all major scripts: Unsupervised_Dotfinding, Analyze_data, Plot_data scripts STORM analysis Matlab wrapper for multifit Daostorm (to run locally). Finished and running smoothly on Tuck, 09/16/12 Modify insightM … Continue reading →

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Tuesday 09/11/12

Posted on September 10, 2012 by admin

9:10 AM – 7:15 P, 9:00P – 11:55 P Log off Tuck (Reserved for Yari) – 7 Processes all doing final fit on ~500,000 molecule list (about 1 molecule/per sec!  These are gonna have to get killed…) Finish O/N STORM … Continue reading →

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Monday 09/10/12

Posted on September 10, 2012 by admin

9:40 A – 5:00P, 8:15P – 11:00P Restart data run on Tuck Transfer files from STORM4 (en STORM from 9/6… oops). Etching slide S6 for imaging today. Move ND filter 5 from STORM2 750 line to STORM4. Colenso also notices … Continue reading →

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Sunday 09/09/12

Posted on September 9, 2012 by admin

4:00P-7:00P, 9:45P-11:30P Organizing snail data in lab notebook summary (see post).  Figured out how to add multiple different slideshows to same post (can reference a wordpress object/post by id=xxxx.  can also use include = attachment id. (mouse over thumbnail for … Continue reading →

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Protected: Maps of all snail perturbation data

Posted on September 9, 2012 by admin

There is no excerpt because this is a protected post.

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First pass at H3K27me3 imaging at the ANT-C locus in embryos

Posted on September 9, 2012 by admin
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Saturday 09/08/12

Posted on September 8, 2012 by admin

10:15 A – 7:00P, 9:00P-10:00P Working with new ways to plot snail data updated annotation on snail modeling and snail Pr/enh data plotting. modeling repressor strength. plotting summary of k27 STORM results at Hox loci (see post) working on plotting … Continue reading →

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Protected: exploring repression and activation from the same enhancer (with snail)

Posted on September 8, 2012 by admin

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Friday 09/07/12

Posted on September 7, 2012 by admin

9:05 A – 8:00 P O/N STORM lost focus attempt to get bead images aborted.  Issues with focus lock delayed start and Colenso needs to get on the machine. O/N confocal still had lots of issues with z-focus (apparently not … Continue reading →

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