September 2025 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Tag Archives: STORM
Monday 07/01/13
9:45 A – 8:00 P 9:00 P – 12:00 A STORM O/N STORM lost focus early in night :(. Reset focus, got a few more cells during 4.5 hour lab meeting. Replaced buffer on chiseled PhF slide. Setting up to … Continue reading
Thursday 05/06/13
10:30A – 7:30P, 9:00P-12:45A project 2: Team meeting, 2PM notes and planning Clarification meeting with XZ more cell staining Presentations putting rough slide drafts together for Wu lab presentation taking slides from non sensitive data for SDB presentation STORM STORM … Continue reading
Friday 05/31/13
10:00 A – 7:00P, 9:30P – 12:30 A Check RNA hybes on STORM2 (hybed at 50C (55C?) in dry oven O/N in coverglass preps like for DNA labeling) (quick check on turnkey looked promising) tub looks good but hard to … Continue reading
Tuesday 05/21/13
8:30 A – 5:00 P, 7:30 P – 11:45 P Probe making ethanol precipitations Ethanol precipitate B/Y/K/G probes from 2-5 mL scale synthesis (which had poor nicking and extra-large bands). Ethanol precipitate new 4 mL scale B/Y/K/U PCRs with primer-fixed … Continue reading
Posted in Summaries
Tagged cell labeling, images, probe making, STORM
Comments Off on Tuesday 05/21/13
Sunday 05/19/13
10:30 A – 10:00 P, 11:00 P – 12:15 A Probe extraction Previous test gel, suggesting some samples at least have probe: Run denaturing gel at 100 uL scale 95 minutes. Cut out smallest band over 50 bp. sample loading … Continue reading
Wednesday 05/08/13
9:30 A — Probe making pool digests aliquot out test DNA: 1 uL digest DNA, 3 uL TBE, 1 uL 6x loading dye + 12x gel green, 5 uL formamide with 5% 5M EDTA Pour new 16% urea PAGE gels … Continue reading
Posted in Summaries
Tagged literature, probe making, STORM, STORM analysis
Comments Off on Wednesday 05/08/13
Protected: Ph FLAG and Ph FLAG M
There is no excerpt because this is a protected post.
Protected: issues with ph-FLAG round 1
There is no excerpt because this is a protected post.
Posted in Chromatin
Tagged images, STORM, troubleshooting
Comments Off on Protected: issues with ph-FLAG round 1
Friday 03/29/13
9:30 A – 8:10 P, 9:00 P – 12:10 A Install cryo-attachment be sure to retract arm and center FC mount prior to mounting be sure there is space between the arm and the chamber so the arm can move … Continue reading
Tuesday 03/12/13
10:00A – 11:15P STORM Finish O/N STORM run on STORM2 Finish O/N STORM run on STORM3 Installing mount and sliders on STORM4 to allow for 3D imaging Lessons: Final appeture (removed for alignment) front-back position chosen to minimize the size … Continue reading