Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Daily Archives: February 3, 2013
Z-calibration
Same set of molecules at a collection of different heights Challenges Stage tilted: all molecules in a given frame DO NOT have the same wx wy distortion. Stage started position uncertain — might not be mid-range. Stage z-drift during movie … Continue reading
Sunday 02/03/2012
11:00 A – 6:30P, 7:30P – 12:30 A STORM Finish O/N STORM run Take bead image z-calibration Take bead images for chromatic correction Copy data to Alistair8 Coding Fixed bugs in file export in STORMfinderBeta Generalize Z-calibration to work with … Continue reading
Coding Goals 02/02/13
Short Term Goals DaoSTORM Clean up calls for DaoSTORM in STORMfinder to use simplier DaoSTORM installation. (Complete 02/02/13) Test run DaoSTORM Merge all active projects in Matlab_STORM into Beta Move latest version of Insight3 and DaoSTORM in matlab-storm. (completed 02/02/13) … Continue reading