Tag Archives: Deep Sequencing

Tuesday 02/25/14

Posted on February 25, 2014 by admin

11:00a – 11:30p Data compression (~11a-12p) troubleshooting beaddax averaging added some safety checks. System now checks to see if detected files for deletion contain the downsampled ds tag. If they do they won’t be deleted. System also checks if 561 … Continue reading →

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Friday 02/21/14

Posted on February 21, 2014 by admin

10:15a – 5:50p Chromatin Project Library 3 prep finish annotating new lib3 yellow green regions ran probe folding for yellow green regions Current probes (including 10 new black, 8 new blue): 91144 Deep Seq analysis Trying to understand why some … Continue reading →

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Friday 02/14/14

Posted on February 14, 2014 by admin

10:00a – 7:15p Deep sequencing analysis Effect of Seq Prep on Abundance Prepping samples for sequencing this time at least doesn’t seem to introduce large distortion in abundance. Would have been good to sequence these libraries much deeper though, average … Continue reading →

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Friday 02/07/14

Posted on February 7, 2014 by admin

10:00a – 11:30p PH project Meetings Finalize slides discussion with XZ Add effect on cluster count instead of effect on cluster size. Updates working on figure for the effects on cluster count added cluster counts vs. cluster diameter some further … Continue reading →

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Monday 12/02/13

Posted on December 2, 2013 by admin

9:00a – 12:20a Goals work on data analysis / slides for meeting with Ting tomorrow new round of yellow chromatin RNA DNA double stains. Include attempt restain E10rna. Still needs RNase. 3D z-calibration [POSTPONED] Start statistical analysis of Blue Polymer … Continue reading →

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Saturday 11/09/13

Posted on November 9, 2013 by admin

8:30a – 7:30p, 8:30p – 11:30p (remotely) Goals Write to Alvaro (done) Reply to Zenklusen (done) Continue analysis of MiSeq Results (in process) write to Jeff to get gene list (done) repeat RT reaction with more enzyme (done) Work on … Continue reading →

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